Analytical Equipment for Analysis of Trace-level Organic Compounds

Total Organic Carbon and Total Nitrogen

These instruments are designed to measure the small concentrations (0-5 mg/L) of organic compounds typically found in natural water and treated drinking water. Most employ and acidify-purge step to remove inorganic carbon (e.g., carbonates), followed by high temperature combustion and IR detection of the carbon dioxide produced.

The Environmental Engineering program has five total organic carbon (TOC) analyzers, most of which are available for general use.

All but the Dohrmann are based on the high-temperature combustion method. The Shimadzu 5000 in 308 Elab II is most commonly used for drinking water and clean surface water samples. There is a similar instrument (model 5050) in Room 208 dedicated to groundwater research. For those interested in total nitrogen analysis, the Shimadzu TOC/V is the appropriate instrument. This is located in room 308 and can measure TN and organic carbon simultaneously. All of these Shimadzu instruments are equipped with PC-based data systems, that can be used to store and re-calibrate results. A fourth Shimadzu (model 4000) is occasionally used for on-line analysis. This is a skid-mounted unit located in the corner of room 308.

The Dorhmann instrument, an ambient temperature UV/persulfate analyzer, is not commonly used at this time.. All analyzers are equipped with autosamplers except the Beckman. This last instrument is quite old, but well suited for certain specialized needs not requiring low level analysis (e.g., sludges).


Shimadzu TOC/V: Total Organic Carbon and Total Nitrogen Analyzer



Shimadzu 5000: Total Organic Carbon Analyzer

Total Organic Halide Analyzers

These instruments are capable of measuring the total amount of organic chlorine, bromine and iodine in water samples (wastewater, natural water, drinking water). They all employ adsorption to activated carbon for sample pre-concentration and separation of organic halides from inorganic halides. The carbon is then introduced into a high-temperature combustion furnace. The resulting HX is trapped and analyzed for total halogen by precipitation of AgX 2 in a microcoulometer. It is also possible to trap the HX and measure the halide by specific ion analysis (e.g., IC), thereby determining TOCl, TOBr, and TOI.

A Euroglass PC-controlled TOX analyzer is available for use in 301 Elab II (Bay E). This is the more commonly used of the two. It uses only oxygen as a carrier/reactive gas, and is therefore better suited for subsequent specific halide analysis by IC. A Dohrmann DX-20 total organic halide analyzer is also available in for general use. Both analyzers include a carbon adsorption module for pre-concentration and removal of inorganic halide.


Euroglass TOX Analyzer with Adsorption module on right

Dohrmann TOX Analyzer



Gas Chromatographs

Gas chromatographs are commonly used in the EVE program for analysis of trace organic contaminants. These include organic solvents, hydrocarbons, halogenated and non-halogenated disinfection byproducts, pesticides, pharmaceuticals and endocrine disrupters. Nearly all GCs in use are equipped with capillary columns, flash vaporizations injectors and electron capture, flame ionization or thermal conductivity detectors.

The following 10 gas chromatographs are available for general use in the Environmental Engineering labs:

Please consult our Agilent GC resource page for specifics on operation and maintenance of these instruments

Agilent 6890 GCs, with autoinjectors



Agilent 5890 GCs, with autoinjectors


Gas Chromatograph - Mass Spectrometers

The use of mass spectrometers as detectors for gas chromatography represents a powerful addition to standard GC for identification of unknown contaminants or verification of suspected compounds. These GC/MS instruments are more complex to operate than GCs, but their use has revolutionized environmental engineering. There are several types of mass spectrometers, each with its own set of advantages and capabilities. Single quadrupoles are simple and inexpensive, but their abilities to provide unambiguous identification are limited. Ion traps can be quite sensitive and their design often allows for tandem mass spectrometry (e.g., MS/MS). Time of flight mass spectrometers have much higher resolution, allowing the assignment of unambiguous molecular formulae.

Four GC/MS instruments are available in the EVE labs.

One of the two newest and most selective is the time-of-flight instrument (Waters GCT, or GCTOF). This is capable of mass resolution of 10 ppm. However, most GC/MS work (e.g., nitrosamines, haloamides) is currently done with the Saturn 2200 ion trap. In addition, there is a Waters GCT time of flight instrument and a Hewlett-Packard 5988 Gas Chromatograph - Mass Spectrometer, which is a single quadrupole unit. The HP is capable of electron impact ionization, as well as both negative and positive chemical ionization. This instrument is equipped with a pyroprobe, and was last used for Pyrolysis GC/MS of NOM samples. The Varian 2200, the GCT and the HP 5988 are all located in 301 Elab II. In addition, there is an older Varian Ion Trap GC/MS in the same room.

Waters "Time of Flight" GC/MS: The GCT


Hewlett Packard 5988 GC/MS

Liquid Chromatographs (LC, IC, and LC/MS)

Liquid chromatographs (LCs) are better suited for analysis of highly soluble (hydrophilic) organic contaminants than GCs. There are a group of HPLCs designed especially for ion analysis, called ion chromatographs. These use ion exchange columns and conductivity detectors. In general, HPLCs are also better for compounds that would decompose in hot GC injectors. Recent advancements in HPLC technology have helped to overcome some of the drawbacks that had previously limited their use, poor chromatographic resolution, detector insensitivity, incompatibility with MS. HPLC, especially with MS detection has become an essential tool in environmental engineering.

Available Instruments : Three Waters High Performance Liquid Chromatographs (HPLCs) and two Dionex Ion Chromatographs (ICs) are available in the EVE labs. Two of HPLCs are Alliance units that have autosamplers and dual pumps for binary solvent programming. Each has a diode array detector and one also has a fluorescence detector. The third instrument is a new higher pressure LC, called an Ultra Performance Liquid Chromatograph (UPLC). This is a Waters Acuity model, which promises higher resolution than the standard HPLC. Please consult our pages on the Alliance HPLC and Acquity UPLC for more detailed information

All three HPLCs can be used as an inlet to a mass spectrometer (LC/MS). The older Alliance HPLC is situated so that it can feed directly into EWRE's ICP/MS. The newer one is set up with the Waters Quattro Micro (triple quadrupole). There is also the older ThermoQuest LCQ (ion trap). This instrument is capable of LC/MS, LC/MS/MS up to LC/MS 10 . The Acquity is used exclusively with our newest triple quadrupole mass spectrometer (Waters Quattro Premier). These LC/MS combinations are frequently used for analysis of pharmaceuticals in water.

The Dionex ICs have a conductivity detector employing chemical suppression technology. For most inorganic analytical applications, the ICs are the appropriate choice, whereas the HPLCs are most commonly used for organic analytes.


Waters Alliance HPLC with ThermoQuest Ion Trap Mass Spectrometer (LCQ)


Waters Alliance HPLC (left) and Acquity UPLC (right) with Quattro Micro triple quadrupole MS (center)


Dionex Ion Chromatograph with Autoinector