Publications
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Journal
and Book Publications

C. J. Zusi and J. B. Perot, Simulation and Modeling of Turbulence Subjected to a Periods of Axisymmetric Contraction or Expansion,
Submitted to Physics of Fluids, Feb, 2014.

T.P. Eiting, T. D. Smith, J. B. Perot and E. R. Dumont, The Role of the Olfactory Recess in Olfactory Airflow,
Submitted toThe Journal of Experimental Biology, Jan 2014.

J. B. Perot and C. J. Zusi, Differential Forms for Scientists/Engineers,
Journal of Computational Physics, 257, 1373–1393, 2014. DOI: 10.1016/j.jcp.2013.08.007

C. J. Zusi and J. B. Perot, Simulation and Modeling of Turbulence Subjected to a Period of Uniform Plane Strain,
Physics of Fluids, 25, 110819, 2013, DOI: 10.1063/1.4821450

S.V. Kathuria, A. Chan, R. Graceffa, R. Nobrega, C. R.Matthews, T. C. Irving, J. B. Perot, O. Bilsel, Advances in turbulent mixing techniques to study microsecond protein folding reactions,
Biopolymers, 99 (11), 888896, 2013. DOI: 10.1002/bip.22355

A. KhajehSaeed, and J. B. Perot, Direct Numerical Simulation of Turbulence Using GPU Accelerated Supercomputers,
Journal of Computational Physics, 235, 241257, 2013.

M. B. Martell and J. B. Perot, The OrientedEddy Collision Model,
Flow Turbulence and Combustion, 89 (3), 335359, 2012.

A. KhajehSaeed, and J. B. Perot, Computational Fluid Dynamics Simulations using Many Graphics Processors,
Computing in Science and Engineering, 14 (3), 1019, 2012.

J. B. Perot, Determination of the Decay Exponent in Mechanically Stirred Isotropic Turbulence,
Advances in Physics, 1, 022104, 2011. (My Favorite) http://dx.doi.org/10.1063/1.3582815

J. B. Perot, Discrete Conservation Properties of Unstructured Mesh Schemes,
Annual Reviews of Fluid Mechanics, 43, 299–318, 2011.

M. Martell, J. Rothstein & J. B. Perot, An Analysis of Superhydrophobic Turbulent Drag Reduction Mechanisms using Direct Numerical Simulation, Physics of Fluids, 22, 065102, 2010.

A. KhajehSaeed, S. Poole & J.
B. Perot, Acceleration of the
SmithWaterman Algorithm using Single and Multiple Graphics
Processors,
Journal of Computational Physics, 229 (11) 42474258,
2010.

J. B. Perot & J. Gadebusch, A Stress Transport Equation
Model for Simulating Turbulence at any Mesh Resolution. Theoretical and Computational Fluid Dynamics. 23 (4),
271286, 2009.

M. Martell, J. B. Perot & J.
Rothstein, Direct Numerical Simulation of Turbulent Flow over
DragReducing Ultrahydrophobic Surfaces,
Journal of Fluid Mechanics, 620, 3141, 2009.

J. B. Perot & J. Gadebusch, A Selfadapting Turbulence Model for Flow Simulation at any Mesh Resolution,
Physics of Fluids, 19 (11), 115105, 2007.

J. B. Perot and V. Subramanian, A Discrete Calculus Analysis of the Keller Box Scheme and a
Generalization of the Method to Arbitrary Meshes,
Journal of Computational Physics, 226 (1), 494508, 2007.

J. B. Perot and V. Subramanian, Discrete Calculus Methods for Diffusion,
Journal of Computational Physics, 224 (1), 5981, 2007.

J. B. Perot & S. de Bruyn Kops, Modeling Turbulent Dissipation
at Low and Moderate Reynolds Numbers, Journal
of Turbulence. 7, 2006.

V. Subramanian & J. B. Perot, HigherOrder Mimetic Methods for Unstructured Meshes,
Journal of Computational Physics, 219 (1), 6885,
2006.

J. B. Perot, D. Vidovic and P. Wesseling, Mimetic Reconstruction of Vectors, Compatible
Spatial Discretizations, IMA Volumes in Mathematics and its
Applications, Volume 142: Editors: D. N. Arnold, P. B. Bochev, R. B. Lehoucq,
R. A. Nicolaides, and M. Shashkov, Springer, New York, pp
173188, 2006.

J. B. Perot & C. Chartrand, Modeling Return to Isotropy Using Kinetic Equations,
Physics of Fluids. 17 (3), 2005.

J. B. Perot & S. Natu, A Model for the Dissipation
Tensor in Inhomogeneous and Anisotropic Turbulence,
Physics of Fluids. 16 (11), 40534065, 2004.

J. Ou, J. B. Perot and J. Rothstein, Laminar Drag Reduction in
Microchannels Using Ultrahydrophobic Surfaces,
Physics of Fluids, 16 (12), 46354643. 2004.

F. Giraldo & J. B. Perot, A Spectral Element
SemiLagrangian Method for the Spherical Shallow Water
Equations, Journal of Computational Physics. 190 (2), 623650, 2003.

S. Are, X. Zhang & J. B. Perot, Application of the Turbulent
Potential Model to Unsteady Flows and ThreeDimensional
Boundary Layers, International Journal of
Rotating Machinery, 9 (5), 375, 2003.

J. B. Perot & R. Nallapati, A Moving Unstructured Staggered
Mesh Method for the Simulation of Incompressible
FreeSurface Flows, Journal of
Computational Physics, 184, 192214, 2003.

M. Dai, H. Wang, J. B. Perot, & D. P.
Schmidt, Direct Interface Tracking of
Droplet Deformation, Atomization and Sprays, 12, 721735, 2002.

W. Chang & J. B. Perot, Prediction of Turbulent Transition in Boundary Layers Using
the Turbulent Potential Model, Journal of
Turbulence, 3, 022, 2002.

W. Chang, F. Giraldo & J. B. Perot, Analysis of an Exact Fractional Step Method,
Journal of Computational Physics, 179, 117, 2002.

X. Zhang, D. Schmidt & J. B. Perot, Accuracy and Conservation Properties of a ThreeDimensional
Unstructured Staggered Mesh Scheme for Fluid Dynamics,
Journal of Computational Physics, 175, 764791 2002.

J. B. Perot, Conservation Properties of
Unstructured Staggered Mesh Schemes, Journal
of Computational Physics, 159 (1), 5889, 2000.

J. B. Perot, Turbulence Modeling Using Body
Force Potentials, Physics of Fluids, 11
(9), 1999.

J. B. Perot, Comments on the Fractional Step
Method, Journal of Computational Physics,
121, 1995.

J. B. Perot & P. Moin, ShearFree Turbulent Boundary Layers, Part II: New Concepts
for Reynolds Stress Transport Equation Modeling of
Inhomogeneous Flows, Journal of Fluid
Mechanics, 295, 1995.

J. B. Perot & P. Moin, ShearFree Turbulent Boundary Layers, Part I: Physical
Insights into Near Wall Turbulence, Journal
of Fluid Mechanics, 295, 199227, 1995.

J. B. Perot, An Analysis of the Fractional
Step Method, Journal of Computational
Physics, 108 (1), 1993.

P. Bradshaw & J. B. Perot, A
Note on the Turbulent Dissipation Rate in the Viscous Wall
Region, Physics of Fluids A, 5 (12),
1993.
Conference Publications & Presentations

T. P. Eiting, T. D. Smith, J. B. Perot, E. R. Dumont, The Extent of the Transverse Lamina and its Role in Olfactory Airflow,
International Congress of Vertebrate Morphology, Barcelona, Spain, July 2013..

J. B. Perot, The Utility of Mimetic Methods for Computing Geophysical Flows,
2nd Conference on Flow Problems in Oil and Gas Industry, Rotterdam, Netherlands, March 2013.

J. B. Perot, Is the Keller Box Scheme Mimetic?,
SIAM Conference on Computational Science and Engineering, Boston, MA February 2013.

T. P. Eiting, J. B. Perot, E. R. Dumont, Nasal airway morphology and olfactory airflow in phyllostomid bats,
Society for Integrative and Comparative Biology Annual Meeting, San Francisco CA, January 2013.

J. B. Perot and C. Zusi, Simulation and Modeling of Turbulence Subjected to Plane Strain, Parviz 60th Birthday Workshop, San Diego CA, October 2012.

A. KhajehSaeed, S. Poole, J. B. Perot, A Comparison of MultiCore Processors on Scientific Computing Tasks,
InPar 2012: Innovative Parallel Computing, Foundations and Applications of GPU, Manycore, and Heterogeneous Systems, San Jose, CA, May 2012.

A. KhajehSaeed and J. B. Perot, Efficient Implementation of CFD Algorithms on GPU Accelerated Supercomputers,
GPU Technology Conference, San Jose, CA. May 2012.

J. B. Perot & M. Martell, Drag Reduction Using Super Hydrophobic Surfaces,
Workshop: Simulation of Complex Flows: Large Scale DNS and LES of Gaseous and Twophase Flows, Madrid, April 1617th 2012.

J. Blair Perot, The Relationship Between Discrete Calculus Methods and Other Mimetic Approaches, Woudschoten Conference, Zeist, Netherlands, Oct. 2011.

J. Blair Perot, Discrete Calculus Methods and Their Application to Fluid Dynamics, Woudschoten Conference, Zeist, Netherlands, Oct. 2011.

J. Blair Perot, Mike Martel, Chris Zusi, Implementation of the OrientedEddy Collision Model in OpenFoam,
First Dutch OpenFoam Users Meeting, Delft, Netherlands, Nov. 2010.

T. McGuiness and J. B. Perot, Parallel Graph Analysis and Adaptive Meshing using Graphics Processing Units,
2010 Meeting of the Canadian CFD Society, Ottawa, Canada, May 2010.

Russell Tessier, Salma Mirza, and J. Blair Perot, Reconfigurable Sparse MatrixVector Multiplication on FPGAs, ERSA 2010, 7783, 2010.

N. Trask, J. Perot, and D.
Schmidt, M. Lightfoot and S. Danczyk, Modeling of the Internal Two
Phase Flow in a Gas Centered Coaxial Fuel Injector,
48th AIAA Aerospace Sciences Meeting, January,
AIAA20100095, 2010.

J. B. Perot, Higher Order Discrete Calculus Methods,
22nd Biennial Conference on Numerical Analysis, Dundee,
Scotland, June 2007.

S. Menon & J. B. Perot, Implementation of an Efficient Conjugate Gradient Algorithm
for Poisson Solutions on Graphics Processors,
2007 Meeting of the Canadian CFD Society, Toronto, CA, June
2007.

J. Gadebusch & J. B. Perot, SelfAdapting Turbulence Model for Hybrid RANS/LES,
2007 Meeting of the Canadian CFD Society, Toronto, CA, June
2007.

V. Subramanian & J. B. Perot, On
the Development of Discrete Calculus Methods,
2007 Meeting of the Canadian CFD Society, Toronto, CA, June
2007.

J. B. Perot & V. Subramanian, Exact Fractional Step Methods
for Solving the Incompressible NavierStokes Equations,
2007 Meeting of the Canadian CFD Society, Toronto, CA, June
2007.

A. Paschedag, J. B. Perot: Treatment of
surface tension in a flow solver for discontinuous twophase
systems (Behandlung der Grenzflächenspannung in
einem Strömungslöser für diskontinuierliche zweiphasige
Systeme), Sitzung des GVCFachausschusses 'Computational
Fluid Dynamics', 2. March 2006, Überlingen,
Germany.

J. B. Perot & D. Schmidt, Unstructured Adaptive Moving Mesh Solution of Unsteady Shear
Flows and Free Surface Flows,
Proceedings of the 4th International Symposium on Turbulence
and Shear Flow Phenomena, Williamsburg, VA, June 2005.

J. B. Perot, & C. Chartrand, Eddy
Collision Models for Turbulence, Proceedings of
the 6th International Conference on Turbulence Modeling and
Measurements, Sardinia, Italy, May, 2005.

J. Ou, J. B. Perot & J.
Rothstein, Laminar Drag Reduction in the Flow
through Microchannels Using Ultrahydrophobic Surfaces, 78th
ACS Colloid and Surface Science Symposium, New Haven CT ,
June 2004.

J. B. Perot, S. Are, & . C.
Wang, Application
of the Turbulent Potential Model to Complex Flows,
Proceedings of the 5th International Conference on
Turbulence Modeling and Measurements, Mallorca, Spain, Sept,
2002.

M. Dai, B. Perot & D. Schmidt, Heat Transfer
Within Deforming Droplets, ASME Internal
Combustion Engine Division Technical Conference, New
Orleans, LA, September 2002.

M. Dai, H. Wang, J. B. Perot,
and D. Schmidt, A Numerical Method for Interface Tracking,
15^{th} ILASS Meeting, Madison, WI, May, 2002.

J. B. Perot, Application
of the Turbulent Potential Model to Unsteady Flows and
ThreeDimensional Boundary Layers, 9^{th} International Symposium on Transport Phenomena and Dynamics
of Rotating Machinery, Honolulu, HA, February 2002.

M. Dai, B. Perot & D. Schmidt,
New Numerical Methods for Interface Tracking in TwoPhase
Flow, 14^{th} Annual Conference on Liquid
Atomization and Spray Systems, Dearborn, MI, May 2001.

R. Nallapati & J. B. Perot, Numerical
Simulation of FreeSurface Flows Using a Moving Unstructured
Staggered Mesh Method. ASME Fluid Engineering
Summer Conference, Boston, MA, June, 2000.FEDSM200011172.

X. Zhang & J. B. Perot, Unsteady Flow
Prediction of Turbulent Flow Around a Triangular Cylinder.
ASME Fluid Engineering Summer Conference, Boston, MA, June,
2000. FEDSM200011172.

J. B. Perot & M. Ramanathpura, Performance of a
Potential Flow Solver Using PC Clusters. ASME
Fluid Engineering Summer Conference, Boston, MA, June, 2000.
FEDSM200011223.

J. B. Perot & X. Zhang, Potential
Turbulence Model Prediction of Flow Around a Triangular
Cylinder Using an Unstructured Staggered Mesh Method,
Proceedings of the Eighth Annual Conference of the
Computational Fluid Dynamics Society of Canada, Montreal,
June, 2000.

H.S. Tsuei & J. B. Perot, Turbomachinery Predictions Using the Turbulent Potential
Model, AIAA 20000135, Reno, Nevada, Jan, 2000.

J. B. Perot & J. Taupier, Modeling
ThreeDimensional Boundary Layers Using the Turbulent
Potential Model, AIAA 20000914, Reno, Nevada,
Jan, 2000.

J. B. Perot & X. Zhang, Reformulation of
the Unstructured Staggered Mesh Method as a Classic Finite
Volume Method, 2^{nd} International
Conference on Finite Volume Methods and Applications,
Duisburg, Germany, July, 1999.

J. B. Perot & H. Wang, Modeling
Separation and Reattachment Using the Turbulent Potential
Model, Proceedings of the 4^{th} International Conference on Turbulence Modeling and
Measurements, Corsica, France, May, 1999.

J. B. Perot & P. Moin, A New
Approach to Turbulence Modeling, CTR Summer
Program Report 1996, Center for Turbulence Research,
Stanford University, November 1996.

P. Malan, J. Johnston, & J. B.
Perot, Heat Transfer in a ShearFree Turbulent Boundary
Layer, Proceedings of the 2^{nd} International
Symposium on Engineering Turbulence Modeling and
Measurements, W. Rodi & F. Martelli, eds., Elsevier
Publishers, Florence, Italy, June 1993.

J. B. Perot, Direct Numerical
Simulation of Turbulence on the Connection Machine,
Parallel Computational Fluid Dynamics `92, R. B. Pelz, A.
Ecer & J. Hauser, eds., NorthHolland, 1993.

J. B. Perot & P. Moin, A Near Wall Model
for the Dissipation Tensor, Eleventh Australasian Fluid
Mechanics Conference, December 1318, 1992,
Hobart, Tasmania, Australia.

J. B. Perot & P. Moin, New Concepts for
Reynolds Stress Transport Equation Modeling of Inhomogeneous
Flows, Annual Research Briefs, Center for Turbulence
Research, Stanford University, 1993.

J. B. Perot, Turbulence Simulation on the
Connection Machine, NAS Technical Summaries,
NASAAmes Research Center, 1993.
Other Presentations

J. B. Perot, Construction of Mimetic Numerical Methods , Deltares, Delft, Netherlands, July 2013.

J. B. Perot, An Approach to HigherOrder Mimetic Finite Volume Schemes, Eindhoven University, Netherlands, March 2013.

J. B. Perot, The Decay Rate of Isotropic Turbulence, University of Illinois, UrbanaChampagne October 2011.

J. B. Perot, Scientific Computations Using Graphics Processors, Los Alamos National Laboratory , August 2009.

J. B. Perot, Compatible Spatial Discretizations for
Partial Differential Equations, Institute for
Mathematical Applications Workshop,
University of Minnesotta, May 2004.

J. B. Perot & D. Schmidt, The Solution of
Incompressible Flow Problems on Moving Staggered Meshes,
Mimetic Discretizations of Continuum Mechanics, San Diego,
July, 2003.

J. B. Perot, An Exact Projection Method, Perspectives on Incompressible Flows: Comparison of
Different Computational Strategies, University of
Maryland, April 2003.

J. B. Perot & X. Zhang, The Development of an Adaptive Moving Unstructured Staggered Mesh Method for Incompressible Flows,19^{th} Biennial Numerical Analysis Conference, Dundee, Scotland, June 2001.
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