Publications
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Journal
and Book Publications

Y.
Song and J.
B. Perot, CFD Simulation of the NREL
Phase VI Rotor
,
Wind Engineering, 39 (3), 299–310, 2015;
C.
J. Zusi and J. B. Perot, Simulation
and Modeling of
Turbulence Subjected to a Periods of Axisymmetric Contraction or
Expansion, Physics of Fluids, 26, 115103, 2014; http://dx.doi.org/10.1063/1.4901188

T.
P.
Eiting, T. D. Smith, J. B. Perot and E. R. Dumont,
The
Role of the Olfactory Recess in Olfactory Airflow , The Journal of Experimental
Biology 217, 17991803, 2014; http://dx.doi.org/10.1242/jeb.097402

J.
B. Perot and C. J. Zusi,
Differential
Forms for Scientists/Engineers
,
Journal of Computational
Physics, 257, 1373–1393, 2014; http://dx.doi.org/10.1016/j.jcp.2013.08.007

C.
J. Zusi and J. B. Perot, Simulation and Modeling of
Turbulence Subjected to
a Period of Uniform Plane Strain, Physics of Fluids, 25,
110819, 2013; http://dx.doi.org/10.1063/1.4821450

S.V.
Kathuria, A. Chan, R. Graceffa, R. Nobrega, C. R.Matthews, T. C.
Irving, J. B. Perot, O. Bilsel, Advances in Turbulent Mixing
Techniques to Study
Microsecond Protein Folding Reactions, Biopolymers, 99 (11),
888896, 2013. http://dx.doi.org/10.1002/bip.22355

A.
KhajehSaeed, and J. B. Perot, Direct Numerical Simulation of
Turbulence Using GPU
Accelerated Supercomputers, Journal of Computational
Physics, 235, 241257, 2013. http://dx.doi.org/10.1016/j.jcp.2012.10.050

M.
B. Martell and J. B. Perot, The OrientedEddy Collision
Model, Flow Turbulence and
Combustion, 89 (3), 335359, 2012. http://dx.doi.org/10.1007/s1049940129395y

A.
KhajehSaeed, and J. B. Perot, Computational Fluid Dynamics Simulations using Many
Graphics Processors, Computing in Science and
Engineering, 14 (3), 1019, 2012.

J.
B. Perot, Determination of the Decay Exponent in Mechanically
Stirred Isotropic Turbulence, Advances in Physics, 1,
022104, 2011; http://dx.doi.org/10.1063/1.3582815

J.
B. Perot, Discrete Conservation Properties of Unstructured
Mesh Schemes, Annual Reviews of Fluid Mechanics, 43, 299–318,
2011.

M.
Martell, J. Rothstein & J. B. Perot, An Analysis of
Superhydrophobic Turbulent Drag Reduction Mechanisms using Direct
Numerical Simulation, Physics of Fluids, 22,
065102, 2010.

A.
KhajehSaeed, S. Poole & J. B. Perot, Acceleration of the
SmithWaterman Algorithm using Single and Multiple Graphics Processors, Journal of Computational
Physics, 229 (11) 42474258, 2010.

J.
B. Perot & J. Gadebusch, A Stress Transport Equation Model for Simulating
Turbulence at any Mesh Resolution. Theoretical
and Computational Fluid Dynamics. 23 (4), 271286, 2009.

M.
Martell, J. B. Perot & J. Rothstein, Direct Numerical Simulation of
Turbulent Flow over DragReducing Ultrahydrophobic Surfaces, Journal of Fluid Mechanics,
620, 3141, 2009.

J.
B. Perot & J. Gadebusch,
A
Selfadapting Turbulence Model for Flow Simulation at any Mesh
Resolution, Physics of Fluids, 19 (11),
115105, 2007.

J.
B. Perot and V. Subramanian, A Discrete Calculus Analysis of the Keller Box
Scheme and a Generalization of the Method to Arbitrary Meshes, Journal of Computational
Physics, 226 (1), 494508, 2007.

J.
B. Perot and V. Subramanian,
Discrete Calculus Methods for Diffusion, Journal of Computational
Physics, 224 (1), 5981, 2007.

J.
B. Perot & S. de Bruyn Kops,
Modeling Turbulent Dissipation
at Low and Moderate Reynolds Numbers, Journal of Turbulence. 7,
2006.

V.
Subramanian & J. B. Perot,
HigherOrder Mimetic Methods
for Unstructured Meshes, Journal of Computational
Physics, 219 (1), 6885, 2006.

J.
B. Perot, D. Vidovic and P. Wesseling,
Mimetic Reconstruction of
Vectors, Compatible Spatial Discretizations, IMA Volumes
in Mathematics and its Applications, Volume 142: Editors:
D. N. Arnold, P. B. Bochev, R. B. Lehoucq, R. A. Nicolaides, and M.
Shashkov, Springer, New York, pp 173188, 2006.

J.
B. Perot & C. Chartrand, Modeling Return to Isotropy
Using Kinetic Equations, Physics of Fluids. 17 (3),
2005.

J.
B. Perot & S. Natu,
A Model for the Dissipation
Tensor in Inhomogeneous and Anisotropic Turbulence, Physics of Fluids. 16 (11),
40534065, 2004.

J.
Ou, J. B. Perot and J. Rothstein,
Laminar Drag Reduction in
Microchannels Using Ultrahydrophobic Surfaces, Physics of Fluids, 16 (12),
46354643. 2004.

F.
Giraldo & J. B. Perot,
A Spectral Element
SemiLagrangian Method for the Spherical Shallow Water Equations, Journal of Computational
Physics. 190 (2), 623650, 2003.

S.
Are, X. Zhang & J. B. Perot,
Application of the Turbulent
Potential Model to Unsteady Flows and ThreeDimensional Boundary Layers, International Journal of
Rotating Machinery, 9 (5), 375, 2003.

J.
B. Perot & R. Nallapati,
A Moving Unstructured Staggered Mesh Method for the
Simulation of Incompressible FreeSurface Flows, Journal of Computational
Physics, 184, 192214, 2003.

M.
Dai, H. Wang, J. B. Perot, & D. P. Schmidt, Direct Interface Tracking of
Droplet Deformation, Atomization and Sprays, 12,
721735, 2002.

W.
Chang & J. B. Perot,
Prediction of Turbulent
Transition in Boundary Layers Using the Turbulent Potential Model, Journal of Turbulence, 3,
022, 2002.

W.
Chang, F. Giraldo & J. B. Perot, Analysis of an Exact Fractional
Step Method, Journal of Computational Physics, 179, 117, 2002.

X.
Zhang, D. Schmidt & J. B. Perot, Accuracy and Conservation
Properties of a ThreeDimensional Unstructured Staggered Mesh Scheme
for Fluid Dynamics, Journal of Computational
Physics, 175, 764791 2002.

J.
B. Perot, Conservation Properties of Unstructured Staggered
Mesh Schemes, Journal of Computational Physics, 159 (1), 5889,
2000.

J.
B. Perot, Turbulence Modeling Using Body Force Potentials, Physics of Fluids, 11 (9),
1999.

J.
B. Perot, Comments
on the Fractional Step Method, Journal of Computational
Physics, 121, 1995.

J.
B. Perot & P. Moin,
ShearFree Turbulent Boundary
Layers, Part II: New Concepts for Reynolds Stress Transport Equation
Modeling of Inhomogeneous Flows, Journal of Fluid Mechanics,
295, 1995.

J.
B. Perot & P. Moin,
ShearFree Turbulent Boundary
Layers, Part I: Physical Insights into Near Wall Turbulence, Journal of Fluid Mechanics,
295, 199227, 1995.

J.
B. Perot, An Analysis of the Fractional Step Method, Journal of Computational
Physics, 108 (1), 1993.

P.
Bradshaw & J. B. Perot, A Note on the Turbulent
Dissipation Rate in the Viscous Wall Region, Physics of Fluids A, 5 (12),
1993.
Conference Publications & Presentations

T.
P. Eiting, T. D. Smith, J. B. Perot, E. R. Dumont, The Extent of the Transverse Lamina and its Role in
Olfactory Airflow, International Congress of Vertebrate Morphology,
Barcelona, Spain, July 2013..

J.
B. Perot, The Utility of Mimetic Methods for Computing
Geophysical Flows, 2nd Conference on Flow
Problems in Oil and Gas Industry, Rotterdam, Netherlands, March 2013.

J.
B. Perot, Is the Keller Box Scheme Mimetic?, SIAM Conference on
Computational Science and Engineering, Boston, MA February 2013.

T. P. Eiting, J. B. Perot, E.
R. Dumont,
Nasal
airway morphology and olfactory airflow in phyllostomid bats, Society for Integrative and
Comparative Biology Annual Meeting, San Francisco CA, January 2013.

J.
B. Perot and C. Zusi, Simulation and Modeling of
Turbulence Subjected to Plane Strain, Parviz 60th Birthday
Workshop, San Diego CA, October 2012.

A.
KhajehSaeed, S. Poole, J. B. Perot, A Comparison of MultiCore Processors on Scientific
Computing Tasks, InPar 2012: Innovative Parallel Computing,
Foundations and Applications of GPU, Manycore, and Heterogeneous
Systems, San Jose, CA, May 2012.

A.
KhajehSaeed and J. B. Perot,
Efficient
Implementation of CFD Algorithms on GPU Accelerated Supercomputers, GPU Technology Conference,
San Jose, CA. May 2012.

J.
B. Perot & M. Martell, Drag Reduction Using Super
Hydrophobic Surfaces, Workshop:
Simulation of Complex Flows: Large Scale DNS and LES of Gaseous and
Twophase Flows, Madrid, April 1617th 2012.

J.
Blair Perot, The
Relationship Between Discrete Calculus Methods and Other Mimetic
Approaches, Woudschoten Conference,
Zeist, Netherlands, Oct. 2011.

J.
Blair Perot, Discrete Calculus Methods and Their Application to
Fluid Dynamics, Woudschoten Conference,
Zeist, Netherlands, Oct. 2011.

J.
Blair Perot, Mike Martel, Chris Zusi, Implementation of the OrientedEddy Collision Model
in OpenFoam, First Dutch OpenFoam Users Meeting, Delft,
Netherlands, Nov. 2010.

T.
McGuiness and J. B. Perot,
Parallel
Graph Analysis and Adaptive Meshing using Graphics Processing Units, 2010 Meeting of the Canadian
CFD Society, Ottawa, Canada, May 2010.

Russell
Tessier, Salma Mirza, and J. Blair Perot,
Reconfigurable Sparse MatrixVector Multiplication
on FPGAs, ERSA 2010, 7783, 2010.

N.
Trask, J. Perot, and D. Schmidt, M. Lightfoot and S. Danczyk,
Modeling of the Internal Two Phase Flow in a Gas
Centered Coaxial Fuel Injector, 48th AIAA Aerospace Sciences
Meeting, January, AIAA20100095, 2010.

J.
B. Perot, Higher Order Discrete Calculus
Methods,
22nd Biennial Conference on Numerical Analysis, Dundee, Scotland, June
2007.

S.
Menon & J. B. Perot, Implementation of an Efficient
Conjugate Gradient Algorithm for Poisson Solutions on Graphics
Processors, 2007 Meeting of the Canadian CFD Society,
Toronto, CA, June 2007.

J.
Gadebusch & J. B. Perot, SelfAdapting Turbulence Model for Hybrid RANS/LES, 2007 Meeting of the Canadian
CFD Society, Toronto, CA, June 2007.

V.
Subramanian & J. B. Perot, On
the Development of Discrete Calculus Methods, 2007 Meeting of the Canadian
CFD Society, Toronto, CA, June 2007.

J.
B. Perot & V. Subramanian, Exact Fractional Step Methods
for Solving the Incompressible NavierStokes Equations, 2007 Meeting of the Canadian
CFD Society, Toronto, CA, June 2007.

A.
Paschedag, J. B. Perot: Treatment of surface tension in a flow solver for
discontinuous twophase systems (Behandlung der
Grenzflächenspannung in einem Strömungslöser für diskontinuierliche
zweiphasige Systeme), Sitzung des GVCFachausschusses 'Computational
Fluid Dynamics', 2. March 2006, Überlingen, Germany.

J. B. Perot & D.
Schmidt, Unstructured
Adaptive Moving Mesh Solution of Unsteady Shear Flows and Free Surface
Flows, Proceedings of the 4th International Symposium on
Turbulence and Shear Flow Phenomena, Williamsburg, VA, June 2005.

J. B. Perot, & C.
Chartrand, Eddy Collision Models for Turbulence,
Proceedings of the 6th International Conference on Turbulence Modeling
and Measurements, Sardinia, Italy, May, 2005.

J. Ou, J. B. Perot & J.
Rothstein, Laminar Drag Reduction in the Flow through Microchannels
Using Ultrahydrophobic Surfaces, 78th ACS Colloid and Surface Science
Symposium, New Haven CT , June 2004.

J. B. Perot, S. Are, &
. C. Wang, Application
of the Turbulent Potential Model to Complex Flows,
Proceedings of the 5th International Conference on Turbulence Modeling
and Measurements, Mallorca, Spain, Sept, 2002.

M. Dai, B. Perot & D.
Schmidt, Heat
Transfer Within Deforming Droplets, ASME
Internal Combustion Engine Division Technical Conference, New Orleans,
LA, September 2002.

M. Dai, H. Wang, J. B. Perot,
and D. Schmidt, A Numerical Method for Interface Tracking,
15^{th} ILASS Meeting, Madison, WI, May, 2002.

J. B. Perot, Application
of the Turbulent Potential Model to Unsteady Flows and
ThreeDimensional Boundary Layers, 9^{th}
International Symposium on Transport Phenomena and Dynamics of Rotating
Machinery, Honolulu, HA, February 2002.

M. Dai, B. Perot & D.
Schmidt, New Numerical Methods for Interface Tracking in TwoPhase
Flow, 14^{th} Annual Conference on Liquid
Atomization and Spray Systems, Dearborn, MI, May 2001.

R. Nallapati & J. B.
Perot, Numerical
Simulation of FreeSurface Flows Using a Moving Unstructured Staggered
Mesh Method. ASME Fluid Engineering
Summer Conference, Boston, MA, June, 2000.FEDSM200011172.

X. Zhang & J. B. Perot,
Unsteady Flow Prediction of Turbulent Flow Around a
Triangular Cylinder. ASME Fluid
Engineering Summer Conference, Boston, MA, June, 2000. FEDSM200011172.

J. B. Perot & M.
Ramanathpura, Performance
of a Potential Flow Solver Using PC Clusters.
ASME Fluid Engineering Summer Conference, Boston, MA, June, 2000.
FEDSM200011223.

J. B. Perot & X. Zhang,
Potential Turbulence Model Prediction of Flow
Around a Triangular Cylinder Using an Unstructured Staggered Mesh Method,
Proceedings of the Eighth Annual Conference of the Computational Fluid
Dynamics Society of Canada, Montreal, June, 2000.

H.S. Tsuei & J. B.
Perot,
Turbomachinery Predictions
Using the Turbulent Potential Model, AIAA 20000135, Reno, Nevada,
Jan, 2000.

J. B. Perot & J.
Taupier, Modeling
ThreeDimensional Boundary Layers Using the Turbulent Potential Model,
AIAA 20000914, Reno, Nevada, Jan, 2000.

J. B. Perot & X. Zhang,
Reformulation of the Unstructured Staggered Mesh
Method as a Classic Finite Volume Method, 2^{nd}
International Conference on Finite Volume Methods and Applications,
Duisburg, Germany, July, 1999.

J. B. Perot & H. Wang, Modeling
Separation and Reattachment Using the Turbulent Potential Model,
Proceedings of the 4^{th} International Conference
on Turbulence Modeling and Measurements, Corsica, France, May, 1999.

J. B. Perot & P. Moin,
A
New Approach to Turbulence Modeling, CTR Summer Program Report
1996, Center for Turbulence Research, Stanford University, November
1996.

P.
Malan, J. Johnston, & J. B. Perot, Heat Transfer in a
ShearFree Turbulent Boundary Layer, Proceedings of the 2^{nd}
International Symposium on Engineering Turbulence Modeling and
Measurements, W. Rodi & F. Martelli, eds., Elsevier Publishers,
Florence, Italy, June 1993.

J.
B. Perot, Direct
Numerical Simulation of Turbulence on the Connection Machine,
Parallel Computational Fluid Dynamics `92, R. B. Pelz, A. Ecer
& J. Hauser, eds., NorthHolland, 1993.

J.
B. Perot & P. Moin, A Near Wall Model for the Dissipation Tensor,
Eleventh Australasian Fluid Mechanics Conference,
December 1318, 1992, Hobart, Tasmania, Australia.

J.
B. Perot & P. Moin, New Concepts for Reynolds Stress Transport Equation
Modeling of Inhomogeneous Flows, Annual Research Briefs,
Center for Turbulence Research, Stanford University, 1993.

J.
B. Perot, Turbulence Simulation on the Connection Machine, NAS Technical Summaries,
NASAAmes Research Center, 1993.
Other Presentations

J.
B. Perot, Construction of Mimetic Numerical Methods ,
Deltares, Delft, Netherlands, July 2013.

J.
B. Perot, An Approach to HigherOrder Mimetic Finite Volume
Schemes, Eindhoven University, Netherlands,
March 2013.

J.
B. Perot, The
Decay Rate of Isotropic Turbulence, University
of Illinois, UrbanaChampagne October 2011.

J.
B. Perot, Scientific
Computations Using Graphics Processors, Los
Alamos National Laboratory , August 2009.

J.
B. Perot, Compatible Spatial Discretizations for Partial
Differential Equations, Institute for
Mathematical Applications Workshop, University of Minnesotta, May 2004.

J.
B. Perot & D. Schmidt, The Solution of Incompressible Flow Problems on
Moving Staggered Meshes, Mimetic Discretizations
of Continuum Mechanics, San Diego, July, 2003.

J.
B. Perot, An
Exact Projection Method, Perspectives on Incompressible
Flows: Comparison of Different Computational Strategies,
University of Maryland, April
2003.

J.
B. Perot & X. Zhang, The Development of an Adaptive Moving Unstructured
Staggered Mesh Method for Incompressible Flows,19^{th} Biennial Numerical
Analysis Conference, Dundee, Scotland, June 2001.
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